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SMTL ID : 7euo.1

The structure of formyl peptide receptor 1 in complex with Gi and peptide agonist fMLF

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x FME- LEU- PHE: Peptide Agonist fMLF(Non-covalent)

FME-LEU-PHE.1:

13 residues within 4Å:

Chain A: F.99, V.123, D.124, L.127, F.128, V.131, R.219, R.223, W.272, Y.275, A.282, I.286, V.301

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:F.99, A:V.123, A:L.127, A:F.128, A:A.282, A:I.286
Hydrogen bonds: A:D.124, A:R.219, A:R.223, A:Y.275, A:Y.275

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:	4 residues within 4Å: Chain A: F.71, H.75, F.90 Ligands: CLR.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.71, A:F.90
CLR.3:	6 residues within 4Å: Chain A: I.80, L.83, N.84, V.87, K.161 Ligands: CLR.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.80, A:L.83, A:V.87, A:K.161 Hydrogen bonds: A:H.75

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chen, G. et al., Structural basis for recognition of N-formyl peptides as pathogen-associated molecular patterns. Nat Commun (2022)

Release Date

2022-05-25

Peptides

fMet-Leu-Phe receptor: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
S

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

fMet-Leu-Phe receptor

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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