SMTL ID : 7ew1.1

Cryo-EM structure of siponimod -bound Sphingosine-1-phosphate receptor 5 in complex with Gi protein

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-mer
Ligands
1 x J8C: 1-[[4-[(~{E})-~{N}-[[4-cyclohexyl-3-(trifluoromethyl)phenyl]methoxy]-~{C}-methyl-carbonimidoyl]-2-ethyl-phenyl]methyl]azetidine-3-carboxylic acid(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yuan, Y. et al., Structures of signaling complexes of lipid receptors S1PR1 and S1PR5 reveal mechanisms of activation and drug recognition. Cell Res. (2021)
Release Date
2021-09-29
Peptides
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
scFv16: D
Sphingosine 1-phosphate receptor 5: E
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
C
C
D
D
E
E
A
Membrane
We predict this structure to be a membrane protein.

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Guanine nucleotide-binding protein G(i) subunit alpha-1

scFv16

Sphingosine 1-phosphate receptor 5

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5he0.1 | 5he3.1 | 5ukm.1 | 6b3j.1 | 6d9h.1 | 6dde.1 | 6ddf.1 | 6e3y.1 | 6k41.1 | 6k42.1 | 6kpf.1 | 6kpg.1 | 6lfm.1 | 6lfo.1 | 6lmk.1 | 6lml.1 | 6m1h.1 | 6m1i.1 | 6n4b.1 | 6nbf.1 | 6nbh.1 | 6nbi.1 | 6ni3.1 | 6niy.1 | 6oij.1 | 6oik.1 | 6orv.1 | 6os9.1 | 6osa.1 | 6ot0.1  more...