SMTL ID : 7ew1.1

Cryo-EM structure of siponimod -bound Sphingosine-1-phosphate receptor 5 in complex with Gi protein

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x J8C: 1-[[4-[(~{E})-~{N}-[[4-cyclohexyl-3-(trifluoromethyl)phenyl]methoxy]-~{C}-methyl-carbonimidoyl]-2-ethyl-phenyl]methyl]azetidine-3-carboxylic acid(Non-covalent)

J8C.1: 13 residues within 4Å: Chain E: K.57, N.125, W.141, E.145, F.149, L.152, T.153, V.156, C.230, W.297, L.300, A.321, L.325 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:F.149, E:L.152, E:L.152, E:V.156, E:V.156, E:A.321, E:L.325 Hydrogen bonds: E:N.125 Salt bridges: E:K.57, E:E.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, Y. et al., Structures of signaling complexes of lipid receptors S1PR1 and S1PR5 reveal mechanisms of activation and drug recognition. Cell Res. (2021)

Release Date

2021-09-29

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
scFv16: D
Sphingosine 1-phosphate receptor 5: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
E

E
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Guanine nucleotide-binding protein G(i) subunit alpha-1

scFv16

Sphingosine 1-phosphate receptor 5

Related Entries With Identical Sequence