SMTL ID : 7joz.1

Crystal structure of dopamine D1 receptor in complex with G protein and a non-catechol agonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x VFP: 6-{4-[(furo[3,2-c]pyridin-4-yl)oxy]-2-methylphenyl}-1,5-dimethylpyrimidine-2,4(1H,3H)-dione(Non-covalent)

VFP.1: 13 residues within 4Å: Chain E: V.287, D.290, I.291, S.294, C.373, S.375, L.377, S.385, S.389, F.475, F.476, N.479, V.504 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:F.475, E:F.475, E:V.504 Hydrogen bonds: E:C.373, E:S.375 pi-Stacking: E:F.476

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 4 residues within 4Å: Chain E: W.310, K.321, A.326, I.329 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, B. et al., Crystal structure of dopamine D1 receptor in complex with G protein and a non-catechol agonist. Nat Commun (2021)

Release Date

2021-04-14

Peptides

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Endolysin,D(1A) dopamine receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Endolysin,D(1A) dopamine receptor

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