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SMTL ID : 7piu.1

Cryo-EM structure of the agonist setmelanotide bound to the active melanocortin-4 receptor (MC4R) in complex with the heterotrimeric Gs protein at 2.6 A resolution.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ARG- CYS- DAL- HIS- DPN- ARG- TRP- CYS: Setmelanotide (other names RM-493; BIM-22493; IRC-022493; Imcivree)(Non-covalent)

ARG-CYS-DAL-HIS-DPN-ARG-TRP-CYS.1:

22 residues within 4Å:

Chain A: F.59, E.108, T.109, I.112, D.130, N.131, D.134, I.137, C.138, L.141, I.193, S.196, I.202, L.205, F.269, H.272, L.273, Y.276, F.292, N.293, L.296
Ligands: CA.2

20 PLIP interactions:

20 interactions with chain A

Hydrophobic interactions: A:I.137, A:I.137, A:L.141, A:I.202, A:L.205, A:F.269, A:L.273, A:Y.276, A:L.296, A:L.296
Hydrogen bonds: A:E.108, A:N.131, A:S.196, A:S.196
Water bridges: A:Q.51, A:Q.51
Salt bridges: A:D.130, A:D.130, A:D.134
pi-Stacking: A:F.59

1 x CA: CALCIUM ION(Non-covalent)

CA.2:

4 residues within 4Å:

Chain A: E.108, D.130, D.134
Ligands: ARG-CYS-DAL-HIS-DPN-ARG-TRP-CYS.1

1 PLIP interactions:

1 interactions with chain A

Metal complexes: A:D.134

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Heyder, N.A. et al., Structures of active melanocortin-4 receptor-Gs-protein complexes with NDP-alpha-MSH and setmelanotide. Cell Res. (2021)

Release Date

2021-11-17

Peptides

Melanocortin receptor 4: A
Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
Camelid antibody fragment - nanobody 35: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
N

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Melanocortin receptor 4

Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Camelid antibody fragment - nanobody 35

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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Extreme

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