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SMTL ID : 7t9i.1

Native human TSH bound to human Thyrotropin receptor in complex with miniGs399 (composite structure)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1:

7 residues within 4Å:

Chain A: K.44, Q.50, K.51, N.52
Chain B: Y.59, D.91, Y.92

No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:	9 residues within 4Å: Chain A: L.12, A.23, P.24, I.25, L.26, N.66, V.68, N.78, T.80 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.23, A:I.25 Hydrogen bonds: A:P.24, A:N.78
NAG.3:	2 residues within 4Å: Chain B: T.8, N.23 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.23
NAG.4:	3 residues within 4Å: Chain D: Y.86, N.87, S.89 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.86
NAG.5:	6 residues within 4Å: Chain D: P.40, S.41, Q.43, P.64, N.65, K.90 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:P.64 Hydrogen bonds: D:N.65, D:K.90
NAG.6:	6 residues within 4Å: Chain D: N.158, Q.161, Y.183, N.186, G.187, Y.213 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:Y.183 Hydrogen bonds: D:N.158
NAG.7:	4 residues within 4Å: Chain D: T.138, N.165, E.166, K.189 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.165, D:E.166

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Faust, B. et al., Autoantibody mimicry of hormone action at the thyrotropin receptor. Nature (2022)

Release Date

2022-08-03

Peptides

Glycoprotein hormones alpha chain: A
Thyrotropin subunit beta: B
Nanobody 35: C
Thyrotropin receptor: D
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: E
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: F
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
N

D
R

E
X

F
Y

G
Z

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Glycoprotein hormones alpha chain

Thyrotropin subunit beta

Nanobody 35

Thyrotropin receptor

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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