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SMTL ID : 7tyo.1

Calcitonin receptor in complex with Gs and human calcitonin peptide

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1:

3 residues within 4Å:

Chain F: W.136, N.138, T.140

3 PLIP interactions:

3 interactions with chain F

Hydrophobic interactions: F:W.136
Hydrogen bonds: F:N.138, F:T.140

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2:	8 residues within 4Å: Chain F: N.194, L.197, I.205, Y.236, M.237, Y.271, W.275 Ligands: Y01.3 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:L.197, F:I.205, F:Y.236, F:Y.271, F:W.275, F:W.275, F:W.275
Y01.3:	7 residues within 4Å: Chain F: Y.236, R.268, Y.271, L.272, G.276, L.279 Ligands: Y01.2 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:Y.236, F:R.268, F:R.268, F:Y.271, F:L.272, F:L.279 Salt bridges: F:R.268, F:R.268

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cao, J. et al., A structural basis for amylin receptor phenotype. Science (2022)

Release Date

2022-03-23

Peptides

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Calcitonin: E
Calcitonin receptor: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
P

F
R

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Calcitonin

Calcitonin receptor

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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