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SMTL ID : 7vui.1

Cryo-EM structure of a class A orphan GPCR

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1:

13 residues within 4Å:

Chain A: D.57, N.58, S.59, G.60, K.61, S.62, T.63, N.159, K.160, D.162, L.163, A.233
Ligands: MG.2

12 PLIP interactions:

12 interactions with chain A

Hydrogen bonds: A:D.57, A:K.61, A:S.62, A:S.62, A:T.63, A:T.63, A:N.159, A:K.160, A:K.160, A:A.233
Salt bridges: A:D.162
pi-Cation interactions: A:K.160

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

3 residues within 4Å:

Chain A: S.62, D.100
Ligands: GTP.1

1 PLIP interactions:

1 interactions with chain A

Metal complexes: A:S.62

1 x 7ZQ: 3-chloranyl-N-[2-oxidanylidene-2-[[(1S)-1-phenylethyl]amino]ethyl]benzamide(Non-covalent)

7ZQ.3:

13 residues within 4Å:

Chain E: F.297, E.320, I.324, W.378, I.381, Y.386, I.396, R.456, M.459, I.460, H.463, N.483, L.487

10 PLIP interactions:

10 interactions with chain E

Hydrophobic interactions: E:F.297, E:I.324, E:I.381, E:I.460, E:H.463, E:N.483, E:L.487
Hydrogen bonds: E:R.456, E:N.483
pi-Cation interactions: E:R.456

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhou, Y. et al., Molecular insights into ligand recognition and G protein coupling of the neuromodulatory orphan receptor GPR139. Cell Res. (2022)

Release Date

2021-12-29

Peptides

Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Chimera of Endo-1,4-beta-xylanase and Probable G-protein coupled receptor 139: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Chimera of Endo-1,4-beta-xylanase and Probable G-protein coupled receptor 139

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

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