SMTL ID : 7wcm.1

Cryo-EM structure of GPR119-Gs Complex with small molecule agonist MBX-2982

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 8VP: 2-[1-(5-ethylpyrimidin-2-yl)piperidin-4-yl]-4-[[4-(1,2,3,4-tetrazol-1-yl)phenoxy]methyl]-1,3-thiazole(Non-covalent)

8VP.1: 16 residues within 4Å: Chain E: F.7, Q.65, T.86, A.89, A.90, V.93, L.94, F.157, V.166, L.169, G.173, F.174, W.238, F.241, E.261, W.265 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:A.89, E:L.94, E:F.157, E:F.157, E:L.169, E:W.238 Hydrogen bonds: E:Q.65 pi-Stacking: E:F.241, E:W.265, E:W.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, Y. et al., Activation and signaling mechanism revealed by GPR119-G s complex structures. Nat Commun (2022)

Release Date

2022-12-21

Peptides

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nb35: D
Glucose-dependent insulinotropic receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nb35

Glucose-dependent insulinotropic receptor

Related Entries With Identical Sequence