SMTL ID : 7wvw.1

Cryo-EM structure of the human formyl peptide receptor 2 in complex with fMYFINILTL and Gi2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x FME- TYR- PHE- ILE- ASN- ILE- LEU: FME-TYR-PHE-ILE-ASN-ILE-LEU-THE-LEU(Non-covalent)

FME-TYR-PHE-ILE-ASN-ILE-LEU.1: 21 residues within 4Å: Chain A: L.200, M.204, V.224, D.225, L.228, F.229, V.232, I.288, Y.294, T.296, L.317, R.320, R.324, G.328, W.373, F.376, Q.377, L.387, L.391, V.403, F.411 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.200, A:V.224, A:F.229, A:I.288, A:T.296, A:L.317, A:L.317, A:L.387, A:L.391, A:V.403, A:F.411 Hydrogen bonds: A:D.225, A:T.296, A:R.320, A:R.320, A:R.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Y. et al., Structural basis of FPR2 in recognition of A beta 42 and neuroprotection by humanin. Nat Commun (2022)

Release Date

2022-04-13

Peptides

Soluble cytochrome b562,N-formyl peptide receptor 2: A
Guanine nucleotide-binding protein G(i) subunit alpha-2: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
C

Membrane

We predict this structure to be a membrane protein.
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Soluble cytochrome b562,N-formyl peptide receptor 2

Guanine nucleotide-binding protein G(i) subunit alpha-2

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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