SMTL ID : 7xxh.1

Cryo-EM structure of the purinergic receptor P2Y1R in complex with 2MeSADP and G11

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 6AD: 2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate)(Non-covalent)

6AD.1: 15 residues within 4Å: Chain A: C.44, T.47, Y.112, Y.113, T.117, R.130, T.203, C.204, Y.205, D.206, T.207, T.208, R.289, Q.293, R.312 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.112, A:Y.112, A:Y.112, A:D.206, A:T.207, A:T.208, A:R.289 Salt bridges: A:R.130, A:R.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B. et al., Structural insights into signal transduction of the purinergic receptors P2Y1R and P2Y12R. Protein Cell (2023)

Release Date

2023-06-07

Peptides

P2Y purinoceptor 1: A
Guanine nucleotide-binding protein G(11) subunit alpha: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scfv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
H

Membrane

We predict this structure to be a membrane protein.
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P2Y purinoceptor 1

Guanine nucleotide-binding protein G(11) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scfv16

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