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SMTL ID : 7yae.1

Octreotide-bound SSTR2-Gi complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x DPN- CYS- PHE- DTR- LYS- THR- CYS- THO: DPN-CYS-PHE-DTR-LYS-THR-CYS-THO(Non-covalent)

DPN-CYS-PHE-DTR-LYS-THR-CYS-THO.1:

16 residues within 4Å:

Chain E: Q.110, M.127, D.130, Q.134, T.202, I.203, Y.213, F.216, F.280, N.284, S.287, P.294, K.299, F.302, V.306, Y.310

11 PLIP interactions:

11 interactions with chain E

Hydrophobic interactions: E:I.203, E:Y.213, E:F.216, E:F.280, E:P.294
Hydrogen bonds: E:D.130, E:T.202, E:S.287, E:S.287, E:K.299, E:K.299

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:	10 residues within 4Å: Chain E: I.88, N.92, I.95, L.99, I.132, K.168, T.171, M.172, W.175 Ligands: CLR.3 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:I.95, E:I.132, E:T.171, E:W.175, E:W.175, E:W.175, E:W.175, E:W.175 Hydrogen bonds: E:K.168
CLR.3:	4 residues within 4Å: Chain E: L.77, I.95, E.98 Ligands: CLR.2 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.77, E:L.77, E:I.95, E:E.98

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, J. et al., Prospect of acromegaly therapy: molecular mechanism of clinical drugs octreotide and paltusotine. Nat Commun (2023)

Release Date

2023-04-19

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
scFv16: D
Somatostatin receptor type 2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
S

E
E

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

Somatostatin receptor type 2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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