SMTL ID : 8f2a.1

Human Amylin3 Receptor in complex with Gs and Pramlintide analogue peptide San385 (Cluster 5 conformation)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.30, G.33 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain A: N.72, M.76 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain C: N.81, G.124 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.81, C:N.81, C:G.124 NAG.4: 6 residues within 4Å: Chain C: F.127, H.129, W.136, N.138, T.140, M.141 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.127, C:W.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, J. et al., Structural insight into selectivity of amylin and calcitonin receptor agonists. Nat.Chem.Biol. (2024)

Release Date

2023-08-02

Peptides

Receptor activity-modifying protein 3: A
Pramlintide analogue San385: B
Calcitonin receptor: C
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: D
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: E
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: F
nanobody 35: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
P

C
R

D
A

E
B

F
G

G
N

Membrane

We predict this structure to be a membrane protein.
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Receptor activity-modifying protein 3

Pramlintide analogue San385

Calcitonin receptor

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

nanobody 35

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