SMTL ID : 8iyh.1

Structure of MK6892-GPR109A-G-protein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x FI7: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid(Non-covalent)

FI7.1: 13 residues within 4Å: Chain C: L.139, Y.143, L.163, A.164, R.167, Q.168, L.214, T.215, S.235, F.236, H.245, M.248, Y.340 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:L.139, C:L.139, C:A.164, C:F.236, C:M.248 Hydrogen bonds: C:T.215, C:S.235, C:F.236, C:Y.340 Salt bridges: C:R.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, M.K. et al., Structure-guided engineering of biased-agonism in the human niacin receptor via single amino acid substitution. Nat Commun (2024)

Release Date

2024-03-06

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
Guanine nucleotide-binding protein G(o) subunit alpha: B
Hydroxycarboxylic acid receptor 2: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
ScFv16 Antibody: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
G

E
H

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(o) subunit alpha

Hydroxycarboxylic acid receptor 2

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

ScFv16 Antibody

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