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SMTL ID : 8j20.1

Cryo-EM structure of FFAR3 bound with valeric acid and AR420626

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 9T4: (4R)-N-[2,5-bis(chloranyl)phenyl]-4-(furan-2-yl)-2-methyl-5-oxidanylidene-4,6,7,8-tetrahydro-1H-quinoline-3-carboxamide(Non-covalent)

9T4.1:

15 residues within 4Å:

Chain C: L.353
Chain D: L.54, L.106, R.113, P.196, L.197, T.200, S.201, Y.204, V.227, T.230, L.231, F.234, V.275, Y.276

18 PLIP interactions:

17 interactions with chain D, 1 interactions with chain C

Hydrophobic interactions: D:L.54, D:L.106, D:L.197, D:T.200, D:Y.204, D:T.230, D:L.231, D:F.234, D:F.234, D:V.275, D:Y.276, C:L.353
Hydrogen bonds: D:R.113, D:R.113, D:T.230, D:T.230
pi-Cation interactions: D:R.113
Halogen bonds: D:V.227

1 x LEA: PENTANOIC ACID(Non-covalent)

LEA.2:

8 residues within 4Å:

Chain D: F.96, C.147, V.150, R.185, M.188, Y.241, H.245, R.258

8 PLIP interactions:

8 interactions with chain D

Hydrophobic interactions: D:F.96, D:V.150, D:V.150
Hydrogen bonds: D:Y.100, D:Y.241
Salt bridges: D:R.185, D:H.245, D:R.258

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Li, F. et al., Molecular recognition and activation mechanism of short-chain fatty acid receptors FFAR2/3. Cell Res. (2024)

Release Date

2024-01-24

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
scFV16: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Free fatty acid receptor 3: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFV16

Guanine nucleotide-binding protein G(i) subunit alpha-1

Free fatty acid receptor 3

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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7piu.1 | 7piv.1 | 7qvm.1 | 7ra3.1 | 7ran.1 | 7rbt.1 | 7rg9.1 | 7rgp.1 | 7s8l.1 | 7s8m.1 | 7s8n.1 | 7s8o.1 | 7s8p.1 | 7sbf.1 | 7scg.1 | 7sf7.1 | 7sf8.1 | 7srr.1 | 7t10.1 | 7t11.1 | 7t2g.1 | 7t2h.1 | 7t6b.1 | 7t8x.1 | 7t90.1 | 7t94.1 | 7t96.1 | 7t9i.1 | 7t9n.1 | 7tmw.1 | 7try.1 | 7ts0.1 | 7tuz.1 | 7tyf.1 | 7tyh.1 | 7tyi.1 | 7tyl.1 | 7tyn.1 | 7tyo.1 | 7tyw.1 | 7tyx.1 | 7tyy.1 | 7tzf.1 | 7u2k.1 | 7u2l.1 | 7um5.1 | 7um6.1 | 7um7.1 | 7utz.1 | 7v35.1 | 7v68.1 | 7v69.1 | 7v6a.1 | 7v9l.1 | 7v9m.1 | 7vdh.1 | 7vdl.1 | 7vdm.1 | 7vfx.1 | 7vie.1 | 7vif.1 | 7vig.1 | 7vih.1 | 7vkt.1 | 7vl8.1 | 7vl9.1 | 7vla.1 | 7vqx.1 | 7vug.1 | 7vuh.1 | 7vui.1 | 7vuj.1 | 7vuy.1 | 7vuz.1 | 7vv3.1 | 7vv5.1 | 7w0l.1 | 7w0m.1 | 7w0n.1 | 7w0o.1 | 7w0p.1 | 7w2z.1 | 7w6p.1 | 7w7e.1 | 7wbj.1 | 7wcm.1 | 7wcn.1 | 7wf7.1 | 7wj5.1 | 7wkd.1 | 7wq3.1 | 7wq4.1 | 7wu2.1 | 7wu3.1 | 7wu4.1 | 7wu5.1 | 7wu9.1 | 7wuj.1 | 7wuq.1 | 7wv9.1 | 7wvu.1 | 7wvv.1 | 7wvw.1 | 7wvx.1 | 7wvy.1 | 7wxu.1 | 7wxw.1 | 7wy0.1 | 7wy5.1 | 7wy8.1 | 7wyb.1 | 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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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