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SMTL ID : 8j20.1

Cryo-EM structure of FFAR3 bound with valeric acid and AR420626

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 9T4: (4R)-N-[2,5-bis(chloranyl)phenyl]-4-(furan-2-yl)-2-methyl-5-oxidanylidene-4,6,7,8-tetrahydro-1H-quinoline-3-carboxamide(Non-covalent)

9T4.1:

15 residues within 4Å:

Chain C: L.353
Chain D: L.54, L.106, R.113, P.196, L.197, T.200, S.201, Y.204, V.227, T.230, L.231, F.234, V.275, Y.276

18 PLIP interactions:

1 interactions with chain C, 17 interactions with chain D

Hydrophobic interactions: C:L.353, D:L.54, D:L.106, D:L.197, D:T.200, D:Y.204, D:T.230, D:L.231, D:F.234, D:F.234, D:V.275, D:Y.276
Hydrogen bonds: D:R.113, D:R.113, D:T.230, D:T.230
pi-Cation interactions: D:R.113
Halogen bonds: D:V.227

1 x LEA: PENTANOIC ACID(Non-covalent)

LEA.2:

8 residues within 4Å:

Chain D: F.96, C.147, V.150, R.185, M.188, Y.241, H.245, R.258

8 PLIP interactions:

8 interactions with chain D

Hydrophobic interactions: D:F.96, D:V.150, D:V.150
Hydrogen bonds: D:Y.100, D:Y.241
Salt bridges: D:R.185, D:H.245, D:R.258

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Li, F. et al., Molecular recognition and activation mechanism of short-chain fatty acid receptors FFAR2/3. Cell Res. (2024)

Release Date

2024-01-24

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
scFV16: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Free fatty acid receptor 3: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFV16

Guanine nucleotide-binding protein G(i) subunit alpha-1

Free fatty acid receptor 3

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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