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SMTL ID : 8jd3.1

Cryo-EM structure of Gi1-bound mGlu2-mGlu3 heterodimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x HZR: 1-butyl-3-chloranyl-4-(4-phenylpiperidin-1-yl)pyridin-2-one(Non-covalent)

HZR.1:

12 residues within 4Å:

Chain A: L.631, F.635, Y.639, D.717, M.720, S.723, L.724, N.727, I.731, W.765, F.768, F.772

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:Y.639, A:L.724, A:N.727, A:I.731, A:F.768, A:F.772, A:F.772
pi-Stacking: A:W.765, A:W.765

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2:	11 residues within 4Å: Chain A: R.49, R.53, S.135, Y.136, S.137, A.158, S.159, T.160, Y.208, D.287, K.369 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:A.158 Hydrogen bonds: A:S.137, A:T.160, A:T.160, A:D.287 Salt bridges: A:R.49, A:R.53, A:K.369
GLU.4:	11 residues within 4Å: Chain B: R.73, R.77, S.158, Y.159, S.160, A.181, S.182, T.183, Y.231, D.310, K.398 11 PLIP interactions: 7 interactions with chain B, 4 Ligand-Ligand interactions Hydrogen bonds: B:S.160, B:T.183, B:T.183, B:K.398, E.4, E.4, E.4, E.4 Salt bridges: B:R.73, B:R.77, B:K.398

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.3:	9 residues within 4Å: Chain A: I.771, T.785, V.788, S.789, L.792 Chain B: L.792, A.793, P.796, V.800 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.771, A:T.785, A:V.788, A:L.792, B:P.796
CLR.5:	3 residues within 4Å: Chain A: L.766 Chain B: A.584, W.585 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.585 Hydrogen bonds: B:W.585
CLR.6:	6 residues within 4Å: Chain A: F.739, R.742 Chain B: A.829, P.830, H.833 Ligands: PEF.7 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.739, B:P.830 Hydrogen bonds: A:R.742

1 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.7:

15 residues within 4Å:

Chain A: T.735, F.739, R.742, A.751, K.752, G.755, F.756, Y.759, L.766
Chain B: K.778, F.779, F.782, F.821, V.822
Ligands: CLR.6

7 PLIP interactions:

4 interactions with chain A, 3 interactions with chain B

Hydrophobic interactions: A:F.739, A:F.739, A:F.756, A:L.766, B:F.782, B:F.821, B:V.822

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wang, X. et al., Structural insights into dimerization and activation of the mGlu2-mGlu3 and mGlu2-mGlu4 heterodimers. Cell Res. (2023)

Release Date

2023-06-21

Peptides

Metabotropic glutamate receptor 2: A
Metabotropic glutamate receptor 3: B
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
2

B
3

C
A

D
B

E
C

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Metabotropic glutamate receptor 2

Metabotropic glutamate receptor 3

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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