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SMTL ID : 8jd6.1

Cryo-EM structure of Gi1-bound metabotropic glutamate receptor mGlu4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-mer

Ligands

1 x BK0: N-(3-chlorophenyl)pyridine-2-carboxamide(Non-covalent)

BK0.1:

15 residues within 4Å:

Chain A: W.565, P.569, V.775, F.779, I.782, T.798, T.799, V.802, S.803, L.806
Chain B: I.774, L.777, A.778, I.780, P.781

5 PLIP interactions:

3 interactions with chain B, 2 interactions with chain A

Hydrophobic interactions: B:I.774, B:L.777, B:I.780, A:V.802, A:L.806

2 x SEP: PHOSPHOSERINE(Non-functional Binders)

SEP.2:	13 residues within 4Å: Chain A: K.52, R.56, S.135, G.136, S.137, A.158, S.159, Y.208, E.265, D.290, S.291, K.295, K.383 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.135, A:S.137, A:T.160 Salt bridges: A:K.52, A:R.56, A:K.295, A:K.383
SEP.3:	13 residues within 4Å: Chain B: K.52, R.56, S.135, G.136, S.137, A.158, S.159, T.160, Y.208, D.290, S.291, K.295, K.383 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.137, B:T.160 Salt bridges: B:K.52, B:R.56, B:K.295, B:K.383

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wang, X. et al., Structural insights into dimerization and activation of the mGlu2-mGlu3 and mGlu2-mGlu4 heterodimers. Cell Res. (2023)

Release Date

2023-06-21

Peptides

Metabotropic glutamate receptor 4: AB
scFv: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: E
Guanine nucleotide-binding protein G(i) subunit alpha-3: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

B
R

C
D

D
C

E
B

F
A

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Metabotropic glutamate receptor 4

scFv

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(i) subunit alpha-3

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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