SMTL ID : 8k9k.1

Full agonist-bound mu-type opioid receptor-G protein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x TYR- DAL- GLY- MEA- ETA: DAMGO(Non-covalent)

TYR-DAL-GLY-MEA-ETA.1: 15 residues within 4Å: Chain A: Q.201, W.210, V.220, I.221, D.224, Y.225, M.228, C.294, T.295, V.313, I.373, V.377, W.395, I.399, Y.403 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.201, A:W.210, A:V.220, A:I.221, A:V.313, A:I.373, A:V.377, A:W.395 Hydrogen bonds: A:Y.403, A:Y.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaneko, S. et al., Structural and dynamic insights into the activation of the mu-opioid receptor by an allosteric modulator. Nat Commun (2024)

Release Date

2024-05-29

Peptides

Soluble cytochrome b562,Mu-type opioid receptor: A
G protein subunit alpha i3: B
Guanine nucleotide binding protein, beta polypeptide 1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
H

Membrane

We predict this structure to be a membrane protein.
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Soluble cytochrome b562,Mu-type opioid receptor

G protein subunit alpha i3

Guanine nucleotide binding protein, beta polypeptide 1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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