SMTL ID : 8kfx.1

Gi bound CCR8 complex with nonpeptide agonist LMD-009

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x OS9: 8-[[3-(2-methoxyphenoxy)phenyl]methyl]-1-(2-phenylethyl)-1,3,8-triazaspiro[4.5]decan-4-one(Non-covalent)

OS9.1: 15 residues within 4Å: Chain D: Y.69, S.114, Q.118, W.126, V.136, S.137, Y.140, Y.141, Y.199, F.281, V.284, L.285, T.309, T.312, E.313 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:Q.118, D:V.136, D:Y.140, D:Y.140, D:Y.199, D:V.284, D:L.285, D:T.309, D:E.313 Hydrogen bonds: D:Y.141, D:Y.199 Salt bridges: D:E.313 pi-Stacking: D:F.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, S. et al., Unveiling the structural mechanisms of nonpeptide ligand recognition and activation in human chemokine receptor CCR8. Sci Adv (2024)

Release Date

2024-02-07

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
C-C chemokine receptor type 8,Fusion protein: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
R

E
S

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

C-C chemokine receptor type 8,Fusion protein

scFv16

Related Entries With Identical Sequence