SMTL ID : 8kfy.1

Gi bound CCR8 complex with nonpeptide agonist ZK 756326

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x OXF: 2-[2-[4-[(3-phenoxyphenyl)methyl]piperazin-1-yl]ethoxy]ethanol(Non-covalent)

OXF.1: 12 residues within 4Å: Chain D: Y.69, Q.118, W.126, S.137, Y.140, Y.141, Y.199, C.210, T.225, N.226, L.285, E.313 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:Y.69, D:Q.118, D:W.126, D:Y.140, D:Y.199 Hydrogen bonds: D:T.225, D:T.225 Salt bridges: D:E.313, D:E.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, S. et al., Unveiling the structural mechanisms of nonpeptide ligand recognition and activation in human chemokine receptor CCR8. Sci Adv (2024)

Release Date

2024-02-07

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
C-C chemokine receptor type 8,Fusion protein: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
R

E
S

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

C-C chemokine receptor type 8,Fusion protein

scFv16

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