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SMTL ID : 8pjk.1

ST171-bound serotonin 5-HT1A receptor - Gi Protein Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	5 residues within 4Å: Chain D: V.388, K.389, G.392, I.393, L.400 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:V.388, D:K.389, D:I.393, D:L.400, D:L.400
CLR.2:	11 residues within 4Å: Chain D: Y.79, T.83, L.87, L.90, Q.141, L.424, A.427, I.428, W.431, S.435, L.438 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:T.83, D:L.424, D:A.427, D:I.428, D:W.431, D:W.431, D:L.438 Water bridges: D:N.144

1 x ZL9: 6-[3-[2-(2-methoxyphenoxy)ethylamino]propoxy]-4~{H}-1,4-benzoxazin-3-one(Non-covalent)

ZL9.3:

12 residues within 4Å:

Chain D: Y.140, Q.141, D.160, V.161, C.164, T.165, I.233, S.243, A.247, F.405, N.430, Y.434

6 PLIP interactions:

6 interactions with chain D

Hydrophobic interactions: D:Y.140, D:V.161, D:A.247
Hydrogen bonds: D:D.160
Water bridges: D:Y.140, D:C.231

1 x T7M: (2R)-1-(heptadecanoyloxy)-3-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propan-2-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)

T7M.4:

12 residues within 4Å:

Chain A: D.350, C.351, G.352
Chain D: R.178, K.386, K.389, T.390, I.394, I.443, Y.444, F.447, N.448

10 PLIP interactions:

8 interactions with chain D, 2 interactions with chain A

Hydrophobic interactions: D:F.447
Hydrogen bonds: D:N.448, D:K.449, D:Q.452, A:C.351, A:C.351
Salt bridges: D:R.178, D:K.386, D:K.389, D:K.389

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ullrich, A. et al., Discovery of a functionally selective serotonin 5-HT_1A receptor agonist for the treatment of pain. Biorxiv (2023)

Release Date

2024-05-29

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
5-hydroxytryptamine receptor 1A: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
R

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

5-hydroxytryptamine receptor 1A

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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