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SMTL ID : 8ugy.1

Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Mianserin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

5 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	4 residues within 4Å: Chain D: I.25, G.29, H.35 Ligands: CLR.2 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.25
CLR.2:	5 residues within 4Å: Chain D: Y.40, V.47, I.124, W.128 Ligands: CLR.1 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.40, D:Y.40, D:Y.40, D:V.47, D:I.124
CLR.3:	7 residues within 4Å: Chain D: I.6, L.10, I.13, E.305, D.308, F.309, W.312 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.6, D:I.6, D:L.10, D:I.13, D:F.309, D:F.309, D:W.312
CLR.4:	3 residues within 4Å: Chain D: C.7, P.58, I.62 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:P.58
CLR.5:	8 residues within 4Å: Chain D: W.92, L.99, W.103, I.130, I.134, Y.166, G.170, L.178 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:W.92, D:L.99, D:W.103, D:I.130, D:I.134, D:Y.166, D:L.178

1 x WRU: Mianserin

WRU.6:

13 residues within 4Å:

Chain D: L.80, D.83, M.84, C.87, T.88, I.156, S.167, A.171, F.288, F.289, E.292, T.311, Y.315

5 PLIP interactions:

5 interactions with chain D

Hydrophobic interactions: D:L.80, D:I.156, D:A.171
Salt bridges: D:D.83
pi-Stacking: D:F.289

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zilberg, G. et al., Structural insights into the unexpected agonism of tetracyclic antidepressants at serotonin receptors 5-HT 1e R and 5-HT 1F R. Sci Adv (2024)

Release Date

2024-05-01

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
5-hydroxytryptamine receptor 1E: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

5-hydroxytryptamine receptor 1E

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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