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SMTL ID : 8uh3.1

Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Setiptiline

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	7 residues within 4Å: Chain C: L.295, L.302, L.332, V.335, I.339, S.346, F.347 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.295, C:L.295, C:L.302, C:L.332, C:V.335, C:I.339, C:F.347 Hydrogen bonds: C:S.346, C:S.346
CLR.2:	7 residues within 4Å: Chain C: Y.59, L.70, A.136, A.140, I.143, W.147 Ligands: CLR.3 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Y.59, C:L.70, C:A.140, C:I.143, C:I.143, C:W.147, C:W.147
CLR.3:	7 residues within 4Å: Chain C: I.44, G.48, H.54, Y.59, C.62, V.66 Ligands: CLR.2 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.44, C:Y.59, C:V.66
CLR.4:	3 residues within 4Å: Chain C: W.111, W.122, L.197 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:W.111, C:L.197

1 x WOQ: Setiptiline

WOQ.5:

11 residues within 4Å:

Chain C: L.99, D.102, M.103, T.107, I.175, A.190, W.304, F.307, F.308, E.311, T.330

7 PLIP interactions:

7 interactions with chain C

Hydrophobic interactions: C:I.175, C:I.175, C:A.190, C:F.307, C:F.307
Salt bridges: C:D.102
pi-Stacking: C:F.308

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zilberg, G. et al., Structural insights into the unexpected agonism of tetracyclic antidepressants at serotonin receptors 5-HT 1e R and 5-HT 1F R. Sci Adv (2024)

Release Date

2024-05-01

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
5-hydroxytryptamine receptor 1E: C
ScFv16: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

D
E

E
G

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(i) subunit alpha-1

5-hydroxytryptamine receptor 1E

ScFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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