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SMTL ID : 8yn2.1

Cryo-EM structure of histamine H1 receptor in complex with histamine and miniGq

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x HSM: HISTAMINE(Non-covalent)

HSM.1:

9 residues within 4Å:

Chain E: D.160, Y.161, S.164, T.165, W.211, N.251, W.481, Y.484, Y.511

4 PLIP interactions:

4 interactions with chain E

Hydrogen bonds: E:S.164, E:N.251, E:N.251, E:Y.484

5 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:	5 residues within 4Å: Chain E: L.87, H.501, F.505, W.508, I.512 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.505, E:F.505, E:I.512 Hydrogen bonds: E:H.501
CLR.3:	8 residues within 4Å: Chain E: V.124, I.128, S.198, I.201, L.202, W.205, F.209 Ligands: CLR.5 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:V.124, E:I.128, E:I.201, E:W.205, E:W.205, E:F.209 Hydrogen bonds: E:S.198
CLR.4:	10 residues within 4Å: Chain E: F.169, F.172, I.173, R.196, A.199, T.200, L.207, I.250, P.255 Ligands: CLR.6 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:F.169, E:I.173, E:T.200, E:L.207, E:I.250, E:P.255
CLR.5:	6 residues within 4Å: Chain E: L.102, V.120, V.124, A.131, V.132 Ligands: CLR.3 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.102, E:V.124, E:A.131, E:V.132
CLR.6:	8 residues within 4Å: Chain E: F.172, I.176, Y.179, R.180, L.254, L.258, F.262 Ligands: CLR.4 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:F.172, E:I.176, E:I.176, E:Y.179, E:L.254

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhang, X. et al., Structural basis of ligand recognition and activation of the histamine receptor family. Nat Commun (2024)

Release Date

2024-10-09

Peptides

Engineered guanine nucleotide-binding protein G(q) subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Antibody fragment scFv16: D
Histamine H1 receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Engineered guanine nucleotide-binding protein G(q) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Antibody fragment scFv16

Histamine H1 receptor

Related Entries With Identical Sequence

5he0.1 | 5he3.1 | 5ukm.1 | 6b3j.1 | 6d9h.1 | 6dde.1 | 6ddf.1 | 6e3y.1 | 6k41.1 | 6k42.1 | 6kpf.1 | 6kpg.1 | 6lfm.1 | 6lfo.1 | 6lmk.1 | 6lml.1 | 6m1h.1 | 6m1i.1 | 6n4b.1 | 6nbf.1 | 6nbh.1 | 6nbi.1 | 6ni3.1 | 6niy.1 | 6oij.1 | 6oik.1 | 6orv.1 | 6os9.1 | 6osa.1 | 6ot0.1 more...less...

6p9x.1 | 6p9y.1 | 6pb0.1 | 6pb1.1 | 6uun.1 | 6uus.1 | 6uva.1 | 6vcb.1 | 6vn7.1 | 6wha.1 | 6whc.1 | 6wi9.1 | 6wpw.1 | 6wzg.1 | 6xbj.1 | 6xbk.1 | 6xbl.1 | 6xbm.1 | 6xox.1 | 7aue.1 | 7bb6.1 | 7bb7.1 | 7bw0.1 | 7c2e.1 | 7ckw.1 | 7ckx.1 | 7cky.1 | 7ckz.1 | 7cmu.1 | 7cmv.1 | 7crh.1 | 7cx2.1 | 7cx3.1 | 7cx4.1 | 7cz5.1 | 7d68.1 | 7d76.1 | 7d77.1 | 7d7m.1 | 7dty.1 | 7dw9.1 | 7e14.1 | 7e2x.1 | 7e2y.1 | 7e2z.1 | 7e32.1 | 7e33.1 | 7e9g.1 | 7e9h.1 | 7eb2.1 | 7eib.1 | 7ej0.1 | 7ej8.1 | 7eja.1 | 7ejk.1 | 7ejx.1 | 7eo2.1 | 7eo4.1 | 7ept.1 | 7eq1.1 | 7euo.1 | 7evy.1 | 7evz.1 | 7ew0.1 | 7ew1.1 | 7ew2.1 | 7ew3.1 | 7ew4.1 | 7ew7.1 | 7exd.1 | 7ezh.1 | 7ezk.1 | 7ezm.1 | 7f16.1 | 7f1q.1 | 7f1r.1 | 7f1s.1 | 7f2o.1 | 7f4d.1 | 7f4f.1 | 7f4h.1 | 7f4i.1 | 7f53.1 | 7f54.1 | 7f55.1 | 7f58.1 | 7f8v.1 | 7f8w.1 | 7f9y.1 | 7f9z.1 | 7fig.1 | 7fih.1 | 7fii.1 | 7fim.1 | 7fin.1 | 7fiy.1 | 7joz.1 | 7jvr.1 | 7ld3.1 | 7ld4.1 | 7mbx.1 | 7mby.1 | 7mts.1 | 7p00.1 | 7p02.1 | 7piu.1 | 7piv.1 | 7qvm.1 | 7ra3.1 | 7ran.1 | 7rbt.1 | 7rg9.1 | 7rgp.1 | 7s8l.1 | 7s8m.1 | 7s8n.1 | 7s8o.1 | 7s8p.1 | 7sbf.1 | 7scg.1 | 7sf7.1 | 7sf8.1 | 7srr.1 | 7t10.1 | 7t11.1 | 7t2g.1 | 7t2h.1 | 7t6b.1 | 7t8x.1 | 7t90.1 | 7t94.1 | 7t96.1 | 7t9i.1 | 7t9n.1 | 7tmw.1 | 7try.1 | 7ts0.1 | 7tuz.1 | 7tyf.1 | 7tyh.1 | 7tyi.1 | 7tyl.1 | 7tyn.1 | 7tyo.1 | 7tyw.1 | 7tyx.1 | 7tyy.1 | 7tzf.1 | 7u2k.1 | 7u2l.1 | 7um5.1 | 7um6.1 | 7um7.1 | 7utz.1 | 7v35.1 | 7v68.1 | 7v69.1 | 7v6a.1 | 7v9l.1 | 7v9m.1 | 7vfx.1 | 7vie.1 | 7vif.1 | 7vig.1 | 7vih.1 | 7vkt.1 | 7vl8.1 | 7vl9.1 | 7vla.1 | 7vqx.1 | 7vug.1 | 7vuh.1 | 7vui.1 | 7vuj.1 | 7w0l.1 | 7w0m.1 | 7w0n.1 | 7w0o.1 | 7w0p.1 | 7w2z.1 | 7w6p.1 | 7w7e.1 | 7wbj.1 | 7wcm.1 | 7wcn.1 | 7wf7.1 | 7wj5.1 | 7wkd.1 | 7wq3.1 | 7wq4.1 | 7wu2.1 | 7wu3.1 | 7wu4.1 | 7wu5.1 | 7wu9.1 | 7wuj.1 | 7wuq.1 | 7wv9.1 | 7wvu.1 | 7wvv.1 | 7wvw.1 | 7wvx.1 | 7wvy.1 | 7wxu.1 | 7wxw.1 | 7wy0.1 | 7wy5.1 | 7wy8.1 | 7wyb.1 | 7wz4.1 | 7wz7.1 | 7x10.1 | 7x2v.1 | 7x9a.1 | 7x9b.1 | 7x9c.1 | 7x9y.1 | 7xa3.1 | 7xat.1 | 7xau.1 | 7xav.1 | 7xbd.1 | 7xbw.1 | 7xbx.1 | 7xk2.1 | 7xk8.1 | 7xmr.1 | 7xms.1 | 7xmt.1 | 7xou.1 | 7xov.1 | 7xp4.1 | 7xp5.1 | 7xp6.1 | 7xt8.1 | 7xt9.1 | 7xta.1 | 7xtb.1 | 7xtc.1 | 7xv3.1 | 7xw5.1 | 7xw6.1 | 7xwo.1 | 7xxh.1 | 7xxi.1 | 7xz5.1 | 7xz6.1 | 7y12.1 | 7y15.1 | 7y3g.1 | 7y64.1 | 7y65.1 | 7y66.1 | 7y67.1 | 7yac.1 | 7yae.1 | 7ydh.1 | 7ydj.1 | 7ydm.1 | 7ydp.1 | 7yfc.1 | 7yfd.1 | 7yj4.1 | 7yk6.1 | 7yk7.1 | 7ykd.1 | 7yon.1 | 7yoo.1 | 7yp7.1 | 7ys6.1 | 8dpf.1 | 8dpg.1 | 8dph.1 | 8dpi.1 | 8dwc.1 | 8dwg.1 | 8dwh.1 | 8dzp.1 | 8dzq.1 | 8dzr.1 | 8dzs.1 | 8e3x.1 | 8e3y.1 | 8e3z.1 | 8e9w.1 | 8e9x.1 | 8e9y.1 | 8e9z.1 | 8f0j.1 | 8f0k.1 | 8f2a.1 | 8f2b.1 | 8f76.1 | 8feg.1 | 8fmz.1 | 8fn0.1 | 8fn1.1 | 8fu6.1 | 8g05.1 | 8g2y.1 | 8g59.1 | 8g94.1 | 8gag.1 | 8gcm.1 | 8gdz.1 | 8ge1.1 | 8ge2.1 | 8ge3.1 | 8ge4.1 | 8ge5.1 | 8ge6.1 | 8ge7.1 | 8ge8.1 | 8ge9.1 | 8gea.1 | 8geb.1 | 8gec.1 | 8ged.1 | 8gee.1 | 8gef.1 | 8geg.1 | 8geh.1 | 8gei.1 | 8gej.1 | 8gfv.1 | 8gfw.1 | 8gfx.1 | 8gfy.1 | 8gfz.1 | 8gg0.1 | 8gg1.1 | 8gg2.1 | 8gg3.1 | 8gg4.1 | 8gg5.1 | 8gg6.1 | 8gg7.1 | 8gg8.1 | 8gg9.1 | 8gga.1 | 8ggb.1 | 8ggc.1 | 8gge.1 | 8ggf.1 | 8ghv.1 | 8guq.1 | 8gur.1 | 8gus.1 | 8gut.1 | 8gy7.1 | 8h0p.1 | 8h0q.1 | 8h4i.1 | 8h4k.1 | 8h4l.1 | 8h8j.1 | 8ha0.1 | 8haf.1 | 8hao.1 | 8hbd.1 | 8hcq.1 | 8hcx.1 | 8hdo.1 | 8hdp.1 | 8hj5.1 | 8hn8.1 | 8hnk.1 | 8hnl.1 | 8hnm.1 | 8hoc.1 | 8hqc.1 | 8hsc.1 | 8hti.1 | 8i2g.1 | 8i95.1 | 8i97.1 | 8i9a.1 | 8i9l.1 | 8i9s.1 | 8ia2.1 | 8ia8.1 | 8id3.1 | 8id4.1 | 8id6.1 | 8id8.1 | 8id9.1 | 8iec.1 | 8ied.1 | 8ikg.1 | 8ikh.1 | 8ikl.1 | 8inr.1 | 8ioc.1 | 8iod.1 | 8iq4.1 | 8iq6.1 | 8irs.1 | 8irt.1 | 8iru.1 | 8irv.1 | 8itl.1 | 8itm.1 | 8iu2.1 | 8iuk.1 | 8iul.1 | 8ium.1 | 8iy9.1 | 8iyh.1 | 8iys.1 | 8iyw.1 | 8iz4.1 | 8izb.1 | 8j18.1 | 8j19.1 | 8j1a.1 | 8j20.1 | 8j21.1 | 8j22.1 | 8j23.1 | 8j24.1 | 8j6d.1 | 8jbf.1 | 8jbg.1 | 8jbh.1 | 8jd3.1 | 8jd5.1 | 8jd6.1 | 8jer.1 | 8jhn.1 | 8jhy.1 | 8jii.1 | 8jil.1 | 8jim.1 | 8jlj.1 | 8jlk.1 | 8jln.1 | 8jlo.1 | 8jlp.1 | 8jlq.1 | 8jlr.1 | 8jpn.1 | 8jpp.1 | 8jr9.1 | 8jso.1 | 8jxt.1 | 8jxv.1 | 8jxw.1 | 8jxx.1 | 8jz7.1 | 8jzz.1 | 8k2x.1 | 8k4s.1 | 8k6m.1 | 8k6n.1 | 8k6o.1 | 8k9k.1 | 8kfx.1 | 8kfy.1 | 8kfz.1 | 8kgg.1 | 8pjk.1 | 8pkm.1 | 8qj2.1 | 8sai.1 | 8sl3.1 | 8smv.1 | 8szg.1 | 8szh.1 | 8szi.1 | 8tb0.1 | 8thk.1 | 8thl.1 | 8tzq.1 | 8u02.1 | 8u1u.1 | 8u4n.1 | 8u4o.1 | 8u4p.1 | 8u4q.1 | 8ugy.1 | 8uh3.1 | 8uhb.1 | 8unl.1 | 8unm.1 | 8unn.1 | 8uno.1 | 8unp.1 | 8unq.1 | 8unr.1 | 8uns.1 | 8unt.1 | 8unu.1 | 8unv.1 | 8unw.1 | 8unx.1 | 8uny.1 | 8unz.1 | 8uo0.1 | 8uo1.1 | 8uo2.1 | 8uo3.1 | 8uo4.1 | 8uwl.1 | 8uxv.1 | 8uxy.1 | 8uy0.1 | 8uyq.1 | 8v6u.1 | 8vhf.1 | 8vy7.1 | 8vy9.1 | 8w87.1 | 8w88.1 | 8w89.1 | 8w8a.1 | 8w8b.1 | 8wa3.1 | 8wc3.1 | 8wc4.1 | 8wc5.1 | 8wc6.1 | 8wc7.1 | 8wc8.1 | 8wc9.1 | 8wca.1 | 8wcb.1 | 8wg7.1 | 8wg8.1 | 8wgb.1 | 8wjx.1 | 8wpu.1 | 8wrb.1 | 8wss.1 | 8wst.1 | 8ww2.1 | 8wwh.1 | 8wwi.1 | 8wwj.1 | 8wwk.1 | 8wwl.1 | 8wwm.1 | 8wwn.1 | 8wz2.1 | 8x16.1 | 8x17.1 | 8x2k.1 | 8x79.1 | 8x7a.1 | 8xgu.1 | 8xio.1 | 8xip.1 | 8xiq.1 | 8xir.1 | 8xjk.1 | 8xjl.1 | 8xjm.1 | 8xjn.1 | 8xjo.1 | 8xof.1 | 8xog.1 | 8xoh.1 | 8xoi.1 | 8xoj.1 | 8xql.1 | 8xqn.1 | 8xqo.1 | 8xqp.1 | 8xqr.1 | 8xqs.1 | 8xqt.1 | 8xve.1 | 8xvh.1 | 8xvi.1 | 8xwp.1 | 8xwq.1 | 8xzf.1 | 8xzg.1 | 8xzh.1 | 8xzi.1 | 8xzj.1 | 8y52.1 | 8y53.1 | 8ykv.1 | 8ykw.1 | 8ykx.1 | 8yky.1 | 8yn3.1 | 8yn4.1 | 8yn5.1 | 8yn6.1 | 8yn7.1 | 8yn8.1 | 8yn9.1 | 8yna.1 | 8yrg.1 | 8yut.1 | 8yuu.1 | 8yuv.1 | 8yw3.1 | 8yw4.1 | 8yw5.1 | 8zbe.1 | 8zcj.1 | 8zjd.1 | 8zje.1 | 8zr5.1 | 8zrk.1 | 8zsj.1 | 8zsp.1 | 8zss.1 | 8zsv.1 | 8zx4.1 | 8zx5.1 | 9asb.1 | 9auc.1 | 9avg.1 | 9avl.1 | 9axf.1 | 9ayf.1 | 9bkk.1 | 9bqj.1 | 9erx.1 | 9gyo.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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