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SMTL ID : 9auc.1

Human Amylin1 Receptor in Complex with Gs and human Calcitonin Gene-Related Peptide

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

5 x PLM: PALMITIC ACID(Non-covalent)

PLM.1:	5 residues within 4Å: Chain F: K.24 Chain G: Y.154, Y.158, L.159 Ligands: PLM.2 6 PLIP interactions: 5 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:Y.154, G:Y.158, G:Y.158, G:L.159 Hydrogen bonds: G:Y.154 Salt bridges: F:K.24
PLM.2:	4 residues within 4Å: Chain G: Y.158, I.161, S.165 Ligands: PLM.1 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain F Hydrophobic interactions: G:I.161 Hydrogen bonds: G:Y.158 Salt bridges: F:K.24
PLM.6:	4 residues within 4Å: Chain E: I.128 Chain G: H.304, A.315, V.318 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain G Hydrophobic interactions: E:I.128, G:A.315, G:V.318 Salt bridges: G:H.304
PLM.7:	4 residues within 4Å: Chain G: L.325, V.328, R.329, R.336 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:V.328 Salt bridges: G:R.336
PLM.8:	4 residues within 4Å: Chain G: V.172, L.175, G.176, V.179 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:L.175, G:V.179

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3:	1 residues within 4Å: Chain G: N.81 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:N.81
NAG.4:	2 residues within 4Å: Chain G: E.131, N.133 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.133
NAG.5:	3 residues within 4Å: Chain G: W.136, N.138, M.141 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:W.136

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.9:	7 residues within 4Å: Chain G: N.194, L.197, F.233, M.237, Y.271, W.275 Ligands: Y01.10 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:F.233, G:Y.271, G:W.275, G:W.275 Salt bridges: G:K.193
Y01.10:	8 residues within 4Å: Chain G: Y.236, R.266, L.267, R.268, Y.271, G.276, L.279 Ligands: Y01.9 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:Y.236, G:Y.271, G:L.279 Hydrogen bonds: G:L.267, G:R.268 Salt bridges: G:R.268

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cao, J. et al., Cryo-EM Structure of the Human Amylin 1 Receptor in Complex with CGRP and Gs Protein. Biochemistry (2024)

Release Date

2024-04-24

Peptides

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Receptor activity-modifying protein 1: E
Calcitonin gene-related peptide 1: F
Calcitonin receptor: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
E

F
P

G
R

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Receptor activity-modifying protein 1

Calcitonin gene-related peptide 1

Calcitonin receptor

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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