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SMTL ID : 9buy.1

Structure of the LM189-Bound beta2AR-Gi Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	7 residues within 4Å: Chain E: Y.101, C.108, V.112, L.146, R.182, L.186 Ligands: CLR.2 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:V.112, E:L.146
CLR.2:	3 residues within 4Å: Chain E: F.197, M.202 Ligands: CLR.1 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.197, E:F.197
CLR.3:	6 residues within 4Å: Chain E: E.153, V.157, V.160, F.164, V.241 Ligands: KBY.5 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:V.157, E:V.160, E:F.164, E:V.241

1 x 01: 4-[(1R)-1-hydroxy-2-{[6-(4-phenylbutoxy)hexyl]amino}ethyl]benzene-1,2-diol

01.4:

15 residues within 4Å:

Chain E: W.140, D.144, V.145, D.223, F.224, S.234, S.238, F.320, N.324, I.334, R.335, K.336, I.340, N.343, Y.347

12 PLIP interactions:

12 interactions with chain E

Hydrophobic interactions: E:W.140, E:V.145, E:F.320, E:I.340
Hydrogen bonds: E:S.234, E:S.234, E:S.238, E:S.238, E:N.324, E:N.343, E:Y.347, E:Y.347

1 x KBY: N-[(3R)-4-(4-tert-butylphenyl)-3-({2-[(4-methoxyphenyl)sulfanyl]-5-[methyl(propan-2-yl)sulfamoyl]benzene-1-carbonyl}amino)butanoyl]glycine(Non-covalent)

KBY.5:

12 residues within 4Å:

Chain E: V.157, V.160, D.161, F.164, S.168, K.171, Y.172, L.175, L.176, K.180, I.184
Ligands: CLR.3

7 PLIP interactions:

7 interactions with chain E

Hydrophobic interactions: E:F.164, E:K.171, E:Y.172, E:Y.172, E:L.176
Hydrogen bonds: E:Y.172
pi-Stacking: E:F.164

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Casiraghi, M. et al., Structure and dynamics determine G protein coupling specificity at a class A GPCR. Sci Adv (2025)

Release Date

2025-05-28

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
scFv16: D
Beta-2 adrenergic receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
R

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

Beta-2 adrenergic receptor

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9j0f.1 | 9j0i.1 | 9j5v.1 | 9jfv.1 | 9jfw.1 | 9jfx.1 | 9jfy.1 | 9jfz.1 | 9jhj.1 | 9jhp.1 | 9k1c.1 | 9k1d.1 | 9k26.1 | 9k6l.1 | 9kpd.1 | 9kpe.1 | 9kpf.1 | 9l3w.1 | 9l3y.1 | 9lgm.1 | 9m1h.1 | 9nox.1 | 9o38.1

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Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

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