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SMTL ID : 9gyo.1

CryoEM structure of Gs-coupled GPBAR with small molecule agonist P395

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x FWX: 2-(ethylamino)-6-[3-(4-propan-2-ylphenyl)propanoyl]-7,8-dihydro-5H-pyrido[4,3-d]pyrimidine-4-carboxamide(Non-covalent)

FWX.1:

16 residues within 4Å:

Chain E: L.211, L.214, W.215, Y.229, P.232, N.233, F.236, S.297, F.301, L.306, E.309, L.314, Y.380, L.384, S.387, S.410

10 PLIP interactions:

10 interactions with chain E

Hydrophobic interactions: E:L.211, E:W.215, E:W.215, E:F.236, E:F.301, E:L.306, E:L.314
Hydrogen bonds: E:W.215, E:Y.229, E:Y.380

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:	8 residues within 4Å: Chain E: V.318, G.319, A.322, F.323, V.326, F.373, W.377, G.378 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:V.318, E:A.322, E:F.323, E:V.326, E:W.377
CLR.3:	10 residues within 4Å: Chain E: A.322, S.325, V.326, L.329, A.330, H.333, Q.366, A.369, M.370, F.373 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:A.322, E:L.329, E:L.329, E:H.333, E:A.369, E:F.373
CLR.4:	6 residues within 4Å: Chain E: A.241, L.245, E.249, M.252, P.260, P.261 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.245

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Castel, J. et al., Deciphering molecular determinants of GPCR-G protein receptor interactions by complementary integrative structural biology methods. To Be Published

Release Date

2024-10-09

Peptides

Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Soluble cytochrome b562,G-protein coupled bile acid receptor 1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Soluble cytochrome b562,G-protein coupled bile acid receptor 1

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

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