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SMTL ID : 1bjv.1

BETA-TRYPSIN COMPLEXED WITH APPU

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

5 PLIP interactions:

4 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	6 residues within 4Å: Chain A: H.40, C.173, Q.174, G.175, S.177 Ligands: GP8.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.175, A:S.177, A:S.177 Salt bridges: A:H.40
SO4.3:	5 residues within 4Å: Chain A: N.79, T.80, L.81, Q.155, W.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.80, A:Q.155

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

5 residues within 4Å:

Chain A: R.49, I.55, N.56, V.58, F.64

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:R.49

1 x GP8: 1-(2-AMIDINOPHENYL)-3-(PHENOXYPHENYL)UREA(Non-covalent)

GP8.5:

15 residues within 4Å:

Chain A: H.40, S.78, L.81, D.171, S.172, C.173, Q.174, S.177, S.192, W.193, G.194, G.196, C.197, G.204
Ligands: SO4.2

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:L.81
Hydrogen bonds: A:D.171, A:D.171, A:S.172, A:S.177, A:S.177
Water bridges: A:V.205

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Presnell, S.R. et al., Oxyanion-mediated inhibition of serine proteases. Biochemistry (1998)

Release Date

1998-12-02

Peptides

BETA-TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

BETA-TRYPSIN

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