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SMTL ID : 1eb2.1

Trypsin inhibitor complex (BPO)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:

3 residues within 4Å:

Chain A: K.125, S.126, S.127

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:S.126, A:S.126, A:S.127
Water bridges: A:S.126, A:S.126

1 x CA: CALCIUM ION(Non-covalent)

CA.2:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:N.54, A:V.57, A:E.62, H₂O.4, H₂O.4

1 x BPO: 3-[(Z)-AMINO(IMINO)METHYL]-N-[2-(4-BENZOYL-1-PIPERIDINYL)-2-OXO-1-PHENYLETHYL]BENZAMIDE(Non-covalent)

BPO.3:

15 residues within 4Å:

Chain A: N.79, T.80, Q.155, D.171, S.172, C.173, Q.174, S.177, V.191, W.193, G.194, S.195, G.196, C.197, G.204

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:D.171, A:D.171, A:S.172, A:G.196, A:G.196
Water bridges: A:V.205
pi-Stacking: A:W.193, A:W.193

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Liebeschuetz, J.W. et al., Pro_Select: Combining Structure-Based Drug Design and Array-Based Chemistry for Rapid Lead Discovery. 2. The Development of a Series of Highly Potent and Selective Factor Xa Inhibitors. J.Med.Chem. (2002)

Release Date

2002-02-11

Peptides

TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSIN

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