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SMTL ID : 1qbn.1

Bovine Trypsin 2-[amino(imino)methyl]-2-hydroxyphenoxy]-6-[3-(4,5-dihydro-1H-imidazol-2-yl)phenoxy]pyridine-4-carboxylic Acid (ZK-806688) Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	4 residues within 4Å: Chain A: E.52, N.54, V.57, E.62 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.2
CA.2:	2 residues within 4Å: Chain A: D.53, E.59 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.53, A:E.59

1 x 688: 2-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-6-[3-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENOXY]PYRIDINE-4-CARBOXYLIC ACID(Non-covalent)

688.3:

14 residues within 4Å:

Chain A: N.79, T.80, L.81, Q.155, D.171, S.172, C.173, Q.174, S.177, W.193, G.194, G.196, C.197, G.204

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:L.81, A:W.193
Hydrogen bonds: A:N.79, A:D.171, A:S.172, A:Q.174, A:Q.174, A:S.177, A:G.194, A:G.196
Water bridges: A:G.175, A:S.195, A:V.205
pi-Stacking: A:W.193

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Whitlow, M. et al., Crystallographic analysis of potent and selective factor Xa inhibitors complexed to bovine trypsin. Acta Crystallogr.,Sect.D (1999)

Release Date

2000-05-03

Peptides

PROTEIN (TRYPSIN): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

PROTEIN (TRYPSIN)

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