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SMTL ID : 1rxp.1

STRUCTURE OF TRYPSIN (ORTHORHOMBIC) WITH 1-(4-TERT-BUTYLCARBAMOYL- PIPERAZINE-1-CARBONYL)-3-(3-GUANIDINO-PROPYL)-4-OXO-AZETIDINE-2-CARBOXYLIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

5 residues within 4Å:

Chain A: E.52, N.54, V.57, V.58, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.2, H₂O.2

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:

2 residues within 4Å:

Chain A: S.127, G.128

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:G.128
Water bridges: A:S.126

1 x 169: 1-(4-TERT-BUTYLCARBAMOYL-PIPERAZINE-1-CARBONYL)-3-(3-GUANIDINO-PROPYL)-4-OXO-AZETIDINE-2-CARBOXYLIC ACID(Covalent)

169.3:

18 residues within 4Å:

Chain A: F.24, C.25, H.40, K.43, D.171, S.172, C.173, Q.174, G.175, D.176, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204

13 PLIP interactions:

13 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:K.43, A:S.172, A:S.172, A:Q.174, A:Q.174, A:G.175, A:D.176, A:S.177, A:G.196
Water bridges: A:W.193, A:V.205
Salt bridges: A:D.171

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sutton, J.C. et al., Solid-phase synthesis and SAR of 4-carboxy-2-azetidinone mechanism-based tryptase inhibitors. Bioorg.Med.Chem.Lett. (2004)

Release Date

2004-06-08

Peptides

TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSIN

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