SMTL ID : 4tpy.1

High throughput screening using acoustic droplet ejection to combine protein crystals and chemical libraries on crystallization plates at high density

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.52, N.54, V.57, E.62 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H2O.8, H2O.8

6 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: N.77, T.80, N.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.77, A:N.82 NA.3: 3 residues within 4Å: Chain A: Q.115, A.140, P.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.115 NA.4: 3 residues within 4Å: Chain A: P.132, D.133, V.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.133, A:V.134 Water bridges: A:D.133 NA.5: 3 residues within 4Å: Chain A: H.40, Y.76, S.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.76, A:Y.76 NA.6: 3 residues within 4Å: Chain A: Q.63, F.64 Ligands: EDO.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.64 Water bridges: A:E.62 NA.7: 2 residues within 4Å: Chain A: T.157, S.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.158, A:S.158

26 x BR: BROMIDE ION(Non-covalent)

BR.8: 2 residues within 4Å: Chain A: N.77, N.79 Ligand excluded by PLIP BR.9: 2 residues within 4Å: Chain A: P.74, S.75 Ligand excluded by PLIP BR.10: 2 residues within 4Å: Chain A: S.92, A.93 Ligand excluded by PLIP BR.11: 2 residues within 4Å: Chain A: S.108, C.109 Ligand excluded by PLIP BR.12: 1 residues within 4Å: Chain A: G.154 Ligand excluded by PLIP BR.13: 4 residues within 4Å: Chain A: C.210, N.211, V.213, S.214 Ligand excluded by PLIP BR.14: 5 residues within 4Å: Chain A: I.65, S.66, K.91, S.92 Ligands: BR.15 Ligand excluded by PLIP BR.15: 2 residues within 4Å: Chain A: S.66 Ligands: BR.14 Ligand excluded by PLIP BR.16: 2 residues within 4Å: Chain A: G.185 Ligands: BR.25 Ligand excluded by PLIP BR.17: 2 residues within 4Å: Chain A: H.73, W.215 Ligand excluded by PLIP BR.18: 5 residues within 4Å: Chain A: P.106, T.107, S.108, K.186, Q.188 Ligand excluded by PLIP BR.19: 3 residues within 4Å: Chain A: S.68, K.69, K.89 Ligand excluded by PLIP BR.20: 5 residues within 4Å: Chain A: Q.188, K.208, V.209, C.210 Ligands: EDO.37 Ligand excluded by PLIP BR.21: 2 residues within 4Å: Chain A: S.78, N.79 Ligand excluded by PLIP BR.22: 2 residues within 4Å: Chain A: N.31, S.102 Ligand excluded by PLIP BR.23: 1 residues within 4Å: Chain A: T.124 Ligand excluded by PLIP BR.24: 4 residues within 4Å: Chain A: T.124, S.130, Y.131, P.132 Ligand excluded by PLIP BR.25: 3 residues within 4Å: Chain A: S.184, G.185 Ligands: BR.16 Ligand excluded by PLIP BR.26: 3 residues within 4Å: Chain A: Q.115, C.116, K.139 Ligand excluded by PLIP BR.27: 3 residues within 4Å: Chain A: V.58, E.59, G.60 Ligand excluded by PLIP BR.28: 2 residues within 4Å: Chain A: Q.199, K.200 Ligand excluded by PLIP BR.29: 2 residues within 4Å: Chain A: S.144, D.145 Ligand excluded by PLIP BR.30: 2 residues within 4Å: Chain A: S.95, N.97 Ligand excluded by PLIP BR.31: 3 residues within 4Å: Chain A: N.97, S.98, R.99 Ligand excluded by PLIP BR.32: 1 residues within 4Å: Chain A: K.217 Ligand excluded by PLIP BR.33: 2 residues within 4Å: Chain A: Y.5, T.6 Ligand excluded by PLIP

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.34: 12 residues within 4Å: Chain A: D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.191 Hydrogen bonds: A:S.172, A:S.172, A:G.196 Water bridges: A:V.205

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.35: 3 residues within 4Å: Chain A: L.143, S.144, S.147 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.144, A:S.144, A:S.147 Water bridges: A:S.146, A:S.147

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.36: 7 residues within 4Å: Chain A: R.49, I.55, N.56, V.57, V.58, F.64 Ligands: EDO.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49, A:R.49, A:V.58 EDO.37: 7 residues within 4Å: Chain A: C.109, A.110, F.161, Q.188, K.208, C.210 Ligands: BR.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.110, A:Q.188 Water bridges: A:A.110, A:K.208 EDO.38: 4 residues within 4Å: Chain A: V.58, E.62, F.64 Ligands: NA.6 No protein-ligand interaction detected (PLIP) EDO.39: 6 residues within 4Å: Chain A: N.79, T.80, L.81, Q.155, W.193 Ligands: EDO.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.79, A:Q.155 EDO.40: 2 residues within 4Å: Chain A: N.79 Ligands: EDO.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.79 Water bridges: A:G.154 EDO.41: 7 residues within 4Å: Chain A: N.19, G.21, Y.22, H.23, I.55, N.56 Ligands: EDO.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:H.23 EDO.42: 3 residues within 4Å: Chain A: N.77, S.78, N.79 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.77, A:S.78 Water bridges: A:S.78, A:S.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplitsky, E. et al., High throughput screening using acoustic droplet ejection to combine protein crystals and chemical libraries on crystallization plates at high density. J.Struct.Biol. (2015)

Release Date

2014-10-22

Peptides

Cationic trypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cationic trypsin

Related Entries With Identical Sequence