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SMTL ID : 1j8a.1

CRYSTAL STRUCTURE OF BENZAMIDINE INHIBITED BOVINE PANCREATIC TRYPSIN AT 105K TO 1.21A RESOLUTION FROM LABORATORY SOURCE WITH HIGH NUMBER OF WATERS MODELLED

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.8

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	5 residues within 4Å: Chain A: H.40, Q.174, G.175, S.177 Ligands: BEN.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.174, A:G.175, A:S.177, A:S.177 Water bridges: A:S.177, A:S.177 Salt bridges: A:H.40
SO4.3:	3 residues within 4Å: Chain A: K.149, P.153, G.154 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.154 Water bridges: A:Q.155, A:I.156, A:I.156, A:I.156 Salt bridges: A:K.149
SO4.4:	3 residues within 4Å: Chain A: S.144, D.145, S.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.145, A:S.146, A:S.146, A:S.146

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.5:

12 residues within 4Å:

Chain A: D.171, S.172, C.173, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204
Ligands: SO4.2

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:S.172, A:S.172, A:G.196
Water bridges: A:V.205

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6:

4 residues within 4Å:

Chain A: S.102, I.103, S.104, G.185

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:S.102, A:S.104, A:S.104
Water bridges: A:S.104

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7:	4 residues within 4Å: Chain A: V.58, E.62, Q.63, F.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.62, A:F.64
GOL.8:	1 residues within 4Å: Chain A: V.58 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.58

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cuesta-Seijo, J.A. et al., Trypsin as a model for high resolution X-ray diffraction in proteins. BOL.R.SOC.HIST.NAT.SEC.GEOL. (2002)

Release Date

2001-09-12

Peptides

TRYPSINOGEN, CATIONIC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSINOGEN, CATIONIC

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