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SMTL ID : 5f6m.1

Isotropic Trypsin Model for Comparison of Diffuse Scattering

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.4

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2:

13 residues within 4Å:

Chain A: D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204
Ligands: SO4.3

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:D.171, A:S.172, A:S.172
Water bridges: A:V.205

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:

5 residues within 4Å:

Chain A: H.40, Q.174, G.175, S.177
Ligands: BEN.2

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:G.175, A:S.177
Water bridges: A:S.177, A:S.177
Salt bridges: A:H.40

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Van Benschoten, A.H. et al., Measuring and modeling diffuse scattering in protein X-ray crystallography. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-01-06

Peptides

Cationic trypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Cationic trypsin

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1aq7.1 | 1auj.1 | 1az8.1 | 1bju.1 | 1bjv.1 | 1c1n.1 | 1c1o.1 | 1c1p.1 | 1c1q.1 | 1c1r.1 | 1c1s.1 | 1c1t.1 | 1c2d.1 | 1c2e.1 | 1c2f.1 | 1c2g.1 | 1c2h.1 | 1c2i.1 | 1c2j.1 | 1c2k.1 | 1c2l.1 | 1c2m.1 | 1c5p.1 | 1c5q.1 | 1c5r.1 | 1c5s.1 | 1c5t.1 | 1c5u.1 | 1c5v.1 | 1c9t.1 more...less...

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Cartoon
Tube
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Spacefill
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Background

Transparent

Resolution

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