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SMTL ID : 1xuh.1

TRYPSIN-KETO-BABIM-CO+2, PH 8.2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1:

3 residues within 4Å:

Chain A: H.40, S.177
Ligands: BAO.4

2 PLIP interactions:

2 interactions with chain A

Metal complexes: A:H.40, A:S.177

1 x CA: CALCIUM ION(Non-covalent)

CA.2:

6 residues within 4Å:

Chain A: E.52, D.53, N.54, V.57, V.58, E.62

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, H₂O.1, H₂O.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:

3 residues within 4Å:

Chain A: S.144, D.145, S.146

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:D.145, A:S.146, A:S.146, A:S.146

1 x BAO: BIS(5-AMIDINO-2-BENZIMIDAZOLYL)METHANONE(Non-covalent)

BAO.4:

19 residues within 4Å:

Chain A: H.40, K.43, D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, S.195, G.196, C.197, A.198, P.203, G.204, V.205
Ligands: CO.1

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:D.171, A:Q.174, A:G.196
Water bridges: A:G.175, A:G.194, A:S.195, A:V.205

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Katz, B.A. et al., Design of potent selective zinc-mediated serine protease inhibitors. Nature (1998)

Release Date

1998-11-11

Peptides

TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSIN

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