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SMTL ID : 1n6x.1

RIP-phasing on Bovine Trypsin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	5 residues within 4Å: Chain A: P.106, T.107, S.108, K.186, Q.188 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.107, A:S.108 Water bridges: A:S.184, A:K.186 Salt bridges: A:K.186
SO4.2:	3 residues within 4Å: Chain A: K.149, P.153, G.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.154 Water bridges: A:Q.155

1 x CA: CALCIUM ION(Non-covalent)

CA.3:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.5, H₂O.5

1 x ABN: BENZYLAMINE(Non-covalent)

ABN.4:

11 residues within 4Å:

Chain A: D.171, S.172, C.173, Q.174, S.177, V.191, W.193, G.194, G.196, C.197, G.204

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:G.196

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

4 residues within 4Å:

Chain A: V.58, E.62, Q.63, F.64

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:E.62, A:F.64

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ravelli, R.B.G. et al., Specific Radiation-Damage Can Be Used To Solve Macromolecular Crystal Structures. Structure (2003)

Release Date

2003-03-04

Peptides

Trypsinogen, cationic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Trypsinogen, cationic

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Cartoon
Tube
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Licorice
Hyperball
Rope
Surface
Spacefill
Outline
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Background

Transparent

Resolution

Low
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Extreme

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