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SMTL ID : 1gbt.1

STRUCTURE OF AN ACYL-ENZYME INTERMEDIATE DURING CATALYSIS: (GUANIDINOBENZOYL) TRYPSIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

5 residues within 4Å:

Chain A: E.52, N.54, V.57, V.58, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.2

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	1 residues within 4Å: Chain A: G.154 No protein-ligand interaction detected (PLIP)
SO4.3:	1 residues within 4Å: Chain A: K.136 No protein-ligand interaction detected (PLIP)

1 x GBS: 4-carbamimidamidobenzoic acid(Covalent)

GBS.4:

14 residues within 4Å:

Chain A: D.171, S.172, C.173, Q.174, G.175, S.177, V.191, S.192, W.193, G.194, S.195, G.196, C.197, G.204

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:S.172, A:G.175, A:D.176, A:S.177, A:S.195
Water bridges: A:D.171, A:V.205
Salt bridges: A:D.171

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Mangel, W.F. et al., Structure of an acyl-enzyme intermediate during catalysis: (guanidinobenzoyl)trypsin. Biochemistry (1990)

Release Date

1994-01-31

Peptides

BETA-TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

BETA-TRYPSIN

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