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SMTL ID : 2g81.1

Crystal Structure of the Bowman-Birk Inhibitor from Vigna unguiculata Seeds in Complex with Beta-trypsin at 1.55 Angstrons Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

5 residues within 4Å:

Chain A: E.52, N.54, V.57, E.59, E.62

5 PLIP interactions:

4 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	4 residues within 4Å: Chain A: N.77, T.80, N.82, N.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.77, A:N.82
SO4.3:	2 residues within 4Å: Chain A: G.21, R.49 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.21 Water bridges: A:R.49, A:R.49 Salt bridges: A:R.49
SO4.4:	2 residues within 4Å: Chain A: N.77, N.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.77, A:N.79 Water bridges: A:N.79
SO4.5:	2 residues within 4Å: Chain A: K.149, G.154 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.154 Water bridges: A:K.149, A:I.156, A:I.156 Salt bridges: A:K.149

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6:

6 residues within 4Å:

Chain A: G.3, Y.165, E.167, G.168, G.169, K.170

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:K.170
Water bridges: A:G.3, A:G.4, A:E.167, A:E.167, A:K.170

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7:

5 residues within 4Å:

Chain A: Y.5, C.7, T.11, V.12, L.117

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:Y.5, A:T.11

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.8:	4 residues within 4Å: Chain A: V.2, K.125, S.126, S.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.124, A:S.126, A:S.127 Water bridges: A:G.3
ACY.9:	2 residues within 4Å: Chain A: G.128, T.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.129

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.10:

14 residues within 4Å:

Chain A: Y.76, S.78, N.79, T.80, L.81, P.153, Q.155, W.193
Chain B: E.23, T.25, Q.31, R.33, S.35, I.64

5 PLIP interactions:

3 interactions with chain B, 2 interactions with chain A

Hydrogen bonds: B:R.33, A:Y.76, A:P.153
Water bridges: B:E.23, B:E.23

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Barbosa, J.A.R.G. et al., Crystal Structure of the Bowman-Birk Inhibitor from Vigna unguiculata Seeds in Complex with {beta}-Trypsin at 1.55 A Resolution and Its Structural Properties in Association with Proteinases. Biophys.J. (2007)

Release Date

2007-01-02

Peptides

Cationic trypsin: A
Bowman-Birk type seed trypsin and chymotrypsin inhibitor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Cationic trypsin

Bowman-Birk type seed trypsin and chymotrypsin inhibitor

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