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SMTL ID : 2tio.1

LOW PACKING DENSITY FORM OF BOVINE BETA-TRYPSIN IN CYCLOHEXANE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:V.57, A:E.62, H₂O.1, H₂O.2

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	5 residues within 4Å: Chain A: H.40, Q.174, G.175, S.177 Ligands: BEN.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.174, A:G.175, A:S.177, A:S.177 Salt bridges: A:H.40
SO4.3:	3 residues within 4Å: Chain A: K.149, P.153, G.154 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.149, A:G.154 Water bridges: A:G.154, A:Q.155 Salt bridges: A:K.149
SO4.4:	3 residues within 4Å: Chain A: R.49, F.64 Ligands: HEX.6 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.19, A:R.49, A:R.49 Salt bridges: A:R.49

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.5:

13 residues within 4Å:

Chain A: D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204
Ligands: SO4.2

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:D.171, A:S.172, A:G.196
Water bridges: A:V.205

1 x HEX: HEXANE(Non-covalent)

HEX.6:

5 residues within 4Å:

Chain A: N.19, G.21, Q.47, R.49
Ligands: SO4.4

1 PLIP interactions:

1 interactions with chain A

Hydrophobic interactions: A:Q.47

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhu, G. et al., X-ray studies on two forms of bovine beta-trypsin crystals in neat cyclohexane. Biochim.Biophys.Acta (1998)

Release Date

1998-09-30

Peptides

PROTEIN (BETA-TRYPSIN): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

PROTEIN (BETA-TRYPSIN)

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1aq7.1 | 1auj.1 | 1az8.1 | 1bju.1 | 1bjv.1 | 1c1n.1 | 1c1o.1 | 1c1p.1 | 1c1q.1 | 1c1r.1 | 1c1s.1 | 1c1t.1 | 1c2d.1 | 1c2e.1 | 1c2f.1 | 1c2g.1 | 1c2h.1 | 1c2i.1 | 1c2j.1 | 1c2k.1 | 1c2l.1 | 1c2m.1 | 1c5p.1 | 1c5q.1 | 1c5r.1 | 1c5s.1 | 1c5t.1 | 1c5u.1 | 1c5v.1 | 1c9t.1 more...less...

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