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SMTL ID : 1k1j.1

BOVINE TRYPSIN-INHIBITOR COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, H₂O.1, H₂O.2

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:

6 residues within 4Å:

Chain A: F.24, H.40, Q.174, G.175, S.177
Ligands: FD2.3

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:G.175, A:D.176, A:S.177, A:S.177
Salt bridges: A:H.40

1 x FD2: N-ALPHA-(2-NAPHTHYLSULFONYL)-N(3-AMIDINO-L-PHENYLALANINYL)ISOPIPECOLINIC ACID METHYL ESTER(Non-covalent)

FD2.3:

19 residues within 4Å:

Chain A: H.40, Y.76, S.78, N.79, L.81, D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, S.195, G.196, C.197, G.204
Ligands: SO4.2

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:L.81, A:Q.174, A:V.191, A:W.193
Hydrogen bonds: A:D.171, A:S.172, A:G.194, A:G.196, A:G.196
Water bridges: A:D.171, A:V.205
Salt bridges: A:H.40

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dullweber, F. et al., Factorising ligand affinity: a combined thermodynamic and crystallographic study of trypsin and thrombin inhibition. J.Mol.Biol. (2001)

Release Date

2001-11-28

Peptides

TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSIN

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