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SMTL ID : 7z2i.1

TRYPSIN (BOVINE) COMPLEXED WITH compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.09 Å

Oligo State

monomer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1:	6 residues within 4Å: Chain A: N.79, T.80, L.81, Q.155, W.193 Ligands: DMS.4 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.193
DMS.2:	3 residues within 4Å: Chain A: N.77, S.78, N.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.78 Water bridges: A:N.77
DMS.3:	6 residues within 4Å: Chain A: R.49, I.55, N.56, V.57, V.58, F.64 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.49
DMS.4:	2 residues within 4Å: Chain A: Q.155 Ligands: DMS.1 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.5:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.3

1 x I9O: 5-[[3-(trifluoromethyl)phenyl]methyl]-1,4,6,7-tetrahydroimidazo[4,5-c]pyridine(Non-covalent)

I9O.6:

13 residues within 4Å:

Chain A: H.40, D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:G.196
Water bridges: A:W.193, A:S.195
pi-Stacking: A:H.40

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Vulpetti, A. et al., Efficient Screening of Target-Specific Selected Compounds in Mixtures by 19 F NMR Binding Assay with Predicted 19 F NMR Chemical Shifts. Chemmedchem (2022)

Release Date

2022-05-25

Peptides

Serine protease 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Serine protease 1

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1aq7.1 | 1auj.1 | 1az8.1 | 1bju.1 | 1bjv.1 | 1c1n.1 | 1c1o.1 | 1c1p.1 | 1c1q.1 | 1c1r.1 | 1c1s.1 | 1c1t.1 | 1c2d.1 | 1c2e.1 | 1c2f.1 | 1c2g.1 | 1c2h.1 | 1c2i.1 | 1c2j.1 | 1c2k.1 | 1c2l.1 | 1c2m.1 | 1c5p.1 | 1c5q.1 | 1c5r.1 | 1c5s.1 | 1c5t.1 | 1c5u.1 | 1c5v.1 | 1c9t.1 more...less...

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