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SMTL ID : 1qb9.1

BOVINE TRYPSIN 7-[[2-[[1-(1-IMINOETHYL)PIPERIDIN-4-YL]OXY]-9H-CARBOZOL-9-YL] METHYL]NAPHTHALENE-2-CARBOXIMIDAMIDE (ZK-806450) COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1:	6 residues within 4Å: Chain A: E.52, N.54, V.57, V.58, E.59, E.62 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.2
CA.2:	3 residues within 4Å: Chain A: D.53, N.54, E.59 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.53, A:E.59, H₂O.1

1 x K: POTASSIUM ION(Non-covalent)

K.3:	4 residues within 4Å: Chain A: H.40, G.175, S.177 Ligands: 806.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.177

1 x 806: 7-[[2-[[1-(1-IMINOETHYL)PIPERIDIN-4-YL]OXY]-9H-CARBOZOL-9-YL]METHYL]NAPHTHALENE-2-CARBOXIMIDAMID(Non-covalent)

806.4:

16 residues within 4Å:

Chain A: N.79, T.80, L.81, Q.155, D.171, S.172, C.173, S.177, V.191, S.192, W.193, G.194, G.196, C.197, G.204
Ligands: K.3

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:L.81, A:V.191, A:W.193
Hydrogen bonds: A:Q.155, A:D.171, A:D.171, A:S.172
Water bridges: A:V.205

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Whitlow, M. et al., Crystallographic analysis of potent and selective factor Xa inhibitors complexed to bovine trypsin. Acta Crystallogr.,Sect.D (1999)

Release Date

2000-04-30

Peptides

PROTEIN (TRYPSIN): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

PROTEIN (TRYPSIN)

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