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SMTL ID : 1g36.1

TRYPSIN INHIBITOR COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, H₂O.14, H₂O.17

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:

5 residues within 4Å:

Chain A: H.40, Q.174, G.175, S.177
Ligands: R11.3

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:G.175, A:S.177
Water bridges: A:H.40
Salt bridges: A:H.40

1 x R11: 4-{[1-METHYL-5-(2-METHYL-BENZOIMIDAZOL-1-YLMETHYL)-1H-BENZOIMIDAZOL-2-YLMETHYL]-AMINO}-BENZAMIDINE(Non-covalent)

R11.3:

17 residues within 4Å:

Chain A: H.40, N.79, T.80, L.81, Q.155, D.171, S.172, C.173, Q.174, S.177, S.192, W.193, G.194, G.196, C.197, G.204
Ligands: SO4.2

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:L.81, A:Q.155, A:W.193, A:W.193
Hydrogen bonds: A:D.171, A:D.171, A:S.172, A:S.177, A:S.177
Water bridges: A:V.205
pi-Stacking: A:W.193

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Nar, H. et al., Structural basis for inhibition promiscuity of dual specific thrombin and factor Xa blood coagulation inhibitors. Structure (2001)

Release Date

2001-10-23

Peptides

TRYPSINOGEN, CATIONIC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSINOGEN, CATIONIC

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