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SMTL ID : 1c1n.1

RECRUITING ZINC TO MEDIATE POTENT, SPECIFIC INHIBITION OF SERINE PROTEASES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

8 residues within 4Å:

Chain A: E.52, D.53, N.54, I.55, V.57, V.58, E.59, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.3

1 x ZN: ZINC ION(Non-covalent)

ZN.2:

5 residues within 4Å:

Chain A: H.40, S.177, S.192
Ligands: SO4.3, BEN.4

3 PLIP interactions:

2 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.40, A:S.177, H₂O.4

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:

7 residues within 4Å:

Chain A: H.40, Q.174, G.175, D.176, S.177
Ligands: ZN.2, BEN.4

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:G.175, A:S.177
Water bridges: A:F.24
Salt bridges: A:H.40

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.4:

19 residues within 4Å:

Chain A: D.171, S.172, C.173, Q.174, D.176, S.177, V.191, S.192, W.193, G.194, S.195, G.196, C.197, A.198, G.204, V.205, Y.206
Ligands: ZN.2, SO4.3

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:D.171, A:D.171, A:S.172
Water bridges: A:S.195, A:V.205

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Katz, B.A. et al., Design of potent selective zinc-mediated serine protease inhibitors. Nature (1998)

Release Date

2000-07-26

Peptides

TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSIN

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