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SMTL ID : 1pph.1

GEOMETRY OF BINDING OF THE NALPHA-TOSYLATED PIPERIDIDES OF M-AMIDINO-, P-AMIDINO-AND P-GUANIDINO PHENYLALANINE TO THROMBIN AND TRYPSIN: X-RAY CRYSTAL STRUCTURES OF THEIR TRYPSIN COMPLEXES AND MODELING OF THEIR THROMBIN COMPLEXES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

5 PLIP interactions:

4 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.2

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:

3 residues within 4Å:

Chain A: K.149, P.153, G.154

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:G.154
Water bridges: A:Q.155, A:I.156

1 x 0ZG: 3-[(2S)-2-{[(4-methylphenyl)sulfonyl]amino}-3-oxo-3-piperidin-1-ylpropyl]benzenecarboximidamide(Non-covalent)

0ZG.3:

15 residues within 4Å:

Chain A: H.40, L.81, D.171, S.172, C.173, Q.174, S.177, V.191, S.192, W.193, G.194, S.195, G.196, C.197, G.204

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:L.81, A:V.191
Hydrogen bonds: A:S.172, A:G.194, A:G.194, A:G.196, A:G.196
Water bridges: A:V.205

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Turk, D. et al., Geometry of binding of the N alpha-tosylated piperidides of m-amidino-, p-amidino- and p-guanidino phenylalanine to thrombin and trypsin. X-ray crystal structures of their trypsin complexes and modeling of their thrombin complexes. FEBS Lett. (1991)

Release Date

1994-01-31

Peptides

TRYPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

TRYPSIN

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