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SMTL ID : 4i8h.1

Bovine trypsin at 0.75 resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.75 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: E.52, N.54, V.57, E.62

6 PLIP interactions:

4 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:E.52, A:N.54, A:V.57, A:E.62, H₂O.1, H₂O.1

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2:

12 residues within 4Å:

Chain A: D.171, S.172, C.173, Q.174, S.177, V.191, W.193, G.194, G.196, C.197, G.204
Ligands: SO4.3

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:V.191
Hydrogen bonds: A:S.172, A:S.172, A:G.196
Water bridges: A:V.205

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:	5 residues within 4Å: Chain A: H.40, Q.174, G.175, S.177 Ligands: BEN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.175, A:S.177, A:S.177 Water bridges: A:S.177, A:S.177 Salt bridges: A:H.40
SO4.4:	3 residues within 4Å: Chain A: K.149, P.153, G.154 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.154 Water bridges: A:Q.155, A:I.156, A:I.156, A:I.156 Salt bridges: A:K.149

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

0 residues within 4Å:

(No contacts)

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Liebschner, D. et al., On the reproducibility of protein crystal structures: five atomic resolution structures of trypsin. Acta Crystallogr.,Sect.D (2013)

Release Date

2012-12-19

Peptides

Cationic trypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Cationic trypsin

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Background

Transparent

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