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SMTL ID : 3alb.1

Cyclic Lys48-linked tetraubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	6 residues within 4Å: Chain A: R.42, Q.49, R.72 Chain B: R.42, Q.49, R.72 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.49, A:Q.49 Salt bridges: B:R.42, B:R.72, A:R.42, A:R.72
SO4.2:	4 residues within 4Å: Chain A: E.51, G.53, R.54 Chain B: R.74 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.53, A:G.53 Salt bridges: A:R.54, B:R.74
SO4.3:	2 residues within 4Å: Chain B: M.1, E.18 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.1, B:E.18
SO4.4:	5 residues within 4Å: Chain C: R.42, Q.49, R.72 Chain D: R.42, R.72 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Water bridges: D:R.42, D:Q.49 Salt bridges: D:R.42, C:R.42, C:R.72 Hydrogen bonds: C:Q.49

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Satoh, T. et al., Crystal structure of cyclic Lys48-linked tetraubiquitin. Biochem.Biophys.Res.Commun. (2010)

Release Date

2010-08-25

Peptides

ubiquitin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ubiquitin

Toggle Identical (ABCD)

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