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SMTL ID : 9g34.1 (1 other biounit)

The HIV protease inhibitor darunavir binding to the active site of Cryphonectria parasitica endothiapepsin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.1:

19 residues within 4Å:

Chain A: D.33, D.35, G.37, S.38, I.77, S.78, Y.79, G.80, D.81, F.116, F.194, D.219, G.221, T.222, T.223, L.224, Y.226, I.300, I.304

20 PLIP interactions:

20 interactions with chain A

Hydrophobic interactions: A:Y.79, A:F.116, A:F.194, A:T.222, A:Y.226, A:I.300, A:I.304
Hydrogen bonds: A:D.35, A:G.37, A:G.37, A:G.80, A:D.81, A:T.223, A:T.223, A:L.224, A:Y.226, A:Y.226
Salt bridges: A:D.35, A:D.81, A:D.219

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

6 residues within 4Å:

Chain A: T.132, L.133, T.190, K.191, Q.192, G.193

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:T.132
Water bridges: A:G.193

1 x NA: SODIUM ION(Non-functional Binders)

NA.3:

1 residues within 4Å:

Chain A: A.178

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:A.178

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Falke, S. et al., The HIV protease inhibitor darunavir binding to the active site of Cryphonectriaparasitica endothiapepsin. To Be Published

Release Date

2024-07-24

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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