SMTL ID : 7h5r.1

Crystal structure of endothiapepsin IS_cryo3 in complex with TL00150 at 100 K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: D.160, G.162, P.166, G.167, K.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.166 Salt bridges: A:K.330

27 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: S.4, A.5, T.6 Ligand excluded by PLIP DMS.4: 7 residues within 4Å: Chain A: G.37, F.194, I.217, D.219, T.222, I.304 Ligands: DMS.6 Ligand excluded by PLIP DMS.5: 5 residues within 4Å: Chain A: D.81, G.221, T.222, T.223 Ligands: U1H.3 Ligand excluded by PLIP DMS.6: 6 residues within 4Å: Chain A: G.80, D.81, T.222, I.300, I.304 Ligands: DMS.4 Ligand excluded by PLIP DMS.7: 4 residues within 4Å: Chain A: G.37, I.77, S.78, L.133 Ligand excluded by PLIP DMS.8: 6 residues within 4Å: Chain A: I.10, D.11, E.118, D.119, S.120, T.121 Ligand excluded by PLIP DMS.9: 7 residues within 4Å: Chain A: A.187, V.188, S.189, E.196, W.197, T.198, D.215 Ligand excluded by PLIP DMS.10: 5 residues within 4Å: Chain A: T.132, L.133, K.191, Q.192, G.193 Ligand excluded by PLIP DMS.11: 4 residues within 4Å: Chain A: S.131, Q.140, Q.141, K.142 Ligand excluded by PLIP DMS.12: 6 residues within 4Å: Chain A: D.81, G.82, S.83, S.113, S.114, S.115 Ligand excluded by PLIP DMS.13: 3 residues within 4Å: Chain A: S.76, S.86, K.111 Ligand excluded by PLIP DMS.14: 2 residues within 4Å: Chain A: P.166, G.167 Ligand excluded by PLIP DMS.15: 5 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, K.330 Ligand excluded by PLIP DMS.16: 4 residues within 4Å: Chain A: Y.185, T.186, A.187, T.324 Ligand excluded by PLIP DMS.17: 2 residues within 4Å: Chain A: T.2, F.173 Ligand excluded by PLIP DMS.18: 3 residues within 4Å: Chain A: T.102, G.103, N.147 Ligand excluded by PLIP DMS.19: 5 residues within 4Å: Chain A: P.61, S.62, S.64, A.67, Y.90 Ligand excluded by PLIP DMS.20: 4 residues within 4Å: Chain A: S.46, T.48, T.49, A.50 Ligand excluded by PLIP DMS.21: 5 residues within 4Å: Chain A: T.200, S.211, G.267, S.268, R.270 Ligand excluded by PLIP DMS.22: 3 residues within 4Å: Chain A: P.282, G.286, S.287 Ligand excluded by PLIP DMS.23: 4 residues within 4Å: Chain A: S.1, G.98, L.99, T.100 Ligand excluded by PLIP DMS.24: 4 residues within 4Å: Chain A: A.237, Q.238, V.239, S.240 Ligand excluded by PLIP DMS.25: 2 residues within 4Å: Chain A: A.320, T.321 Ligand excluded by PLIP DMS.26: 2 residues within 4Å: Chain A: S.284, T.285 Ligand excluded by PLIP DMS.27: 3 residues within 4Å: Chain A: G.205, S.206, Q.238 Ligand excluded by PLIP DMS.28: 3 residues within 4Å: Chain A: Q.28, T.57, I.58 Ligand excluded by PLIP DMS.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x U1H: [4-(trifluoromethyl)phenyl]methanamine(Non-covalent)

U1H.3: 12 residues within 4Å: Chain A: D.33, D.35, Y.79, D.81, S.83, S.115, F.116, D.119, I.122, L.125, G.221 Ligands: DMS.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.116, A:F.116 Hydrogen bonds: A:D.35 pi-Stacking: A:Y.79 Halogen bonds: A:S.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., Cryo2RT: a high-throughput method for room-temperature macromolecular crystallography from cryo-cooled crystals. Acta Crystallogr D Struct Biol (2024)

Release Date

2024-08-07

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothiapepsin

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