SMTL ID : 4tte.1

Crystal structure of ATAD2A bromodomain complexed with methyl 3-amino-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.9, A:R.12, A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.99 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.116 Water bridges: A:E.114

1 x 36Z: methyl 3-amino-5-(3,5-dimethyl-1,2-oxazol-4-yl)benzoate(Non-covalent)

36Z.4: 10 residues within 4Å: Chain A: R.29, V.30, F.31, K.33, P.34, V.35, Y.43, Y.85, N.86, I.96 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.30, A:V.30, A:F.31, A:Y.85, A:I.96 Hydrogen bonds: A:R.29, A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poncet-Montange, G. et al., Observed bromodomain flexibility reveals histone peptide- and small molecule ligand-compatible forms of ATAD2. Biochem.J. (2015)

Release Date

2014-12-24

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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