SMTL ID : 4wur.1

The crystal structure of the MERS-CoV papain-like protease (C111S) with human ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

hetero-1-1-mer

Ligands

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 8 residues within 4Å: Chain A: V.96, H.97, W.99, K.100, M.101, S.151, T.152, I.155 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.155 Hydrogen bonds: A:W.99 IPA.2: 5 residues within 4Å: Chain A: F.40, G.43, Y.61, Y.90, K.93 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.90 Hydrogen bonds: A:K.93

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.197, V.199, C.200, C.232, C.234 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.197, A:C.200, A:C.232, A:C.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lei, J. et al., Structural and mutational analysis of the interaction between the Middle-East respiratory syndrome coronavirus (MERS-CoV) papain-like protease and human ubiquitin. Virol Sin (2016)

Release Date

2014-11-26

Peptides

Papain-like protease: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Papain-like protease

Polyubiquitin-B

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